STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN13662.1Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (327 aa)    
Predicted Functional Partners:
SFN13640.1
Hypothetical protein.
 
    0.814
pafC
Proteasome accessory factor C.
 
     0.713
SFM98218.1
Protein N-acetyltransferase, RimJ/RimL family.
  
   
 0.561
SFM93316.1
Acetyltransferase (GNAT) domain-containing protein.
  
   
 0.557
UvrD
UvrD-like helicase C-terminal domain-containing protein; Belongs to the helicase family. UvrD subfamily.
     
 0.545
uvrD2
ATP-dependent DNA helicase, Rep family.
     
 0.532
pafB
Proteasome accessory factor B.
 
     0.527
parB
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
     
 0.520
parB-2
Chromosome partitioning protein, ParB family.
     
 0.518
Dat
4-amino-4-deoxychorismate lyase.
      
 0.495
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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