STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN34375.1RNA polymerase sigma-70 factor, ECF subfamily. (296 aa)    
Predicted Functional Partners:
RhtA
Inner membrane transporter RhtA.
       0.532
IdeR_2
Iron (metal) dependent repressor, DtxR family.
  
  
 0.515
MsrR_1
Transcriptional attenuator, LytR family.
  
    0.422
SFN32400.1
Predicted transcriptional regulator, ArsR family.
  
    0.421
SFM60124.1
Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
  
 0.417
SFM74039.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.417
EmbR_1
Predicted ATPase.
   
  
 0.416
MoaR1
Predicted ATPase.
   
  
 0.416
SFM00422.1
Mycothiol system anti-sigma-R factor.
  
 
 0.414
SFL68880.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
  
 0.414
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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