STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RipA_1Cell wall-associated hydrolase, NlpC family. (474 aa)    
Predicted Functional Partners:
SFN60534.1
Cell wall-associated hydrolase, NlpC family.
 
  
 0.873
rpf
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
 
  
 0.801
ftsW
Cell division-specific peptidoglycan biosynthesis regulator FtsW; Belongs to the SEDS family.
   
  
 0.722
SFN62489.1
Cell wall-associated hydrolase, NlpC family.
 
  
0.637
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.628
SFL94593.1
Hypothetical protein.
  
  
 0.627
SFL64953.1
Hypothetical protein.
  
  
 0.627
LytC_1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.618
SFL93393.1
Hypothetical protein.
  
     0.609
SFM00628.1
PQQ-like domain-containing protein.
  
    0.594
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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