Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PdhB | hom | SAMN05444423_108136 | SAMN05444423_10321 | 2-oxoisovalerate dehydrogenase E1 component. | Homoserine dehydrogenase. | 0.423 |
PdhB | hom-2 | SAMN05444423_108136 | SAMN05444423_10528 | 2-oxoisovalerate dehydrogenase E1 component. | Homoserine dehydrogenase. | 0.423 |
PdhB | ilvA | SAMN05444423_108136 | SAMN05444423_11713 | 2-oxoisovalerate dehydrogenase E1 component. | L-threonine ammonia-lyase. | 0.851 |
PdhB | ilvD | SAMN05444423_108136 | SAMN05444423_102656 | 2-oxoisovalerate dehydrogenase E1 component. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.433 |
PdhB | ilvD-2 | SAMN05444423_108136 | SAMN05444423_10738 | 2-oxoisovalerate dehydrogenase E1 component. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.433 |
PdhB | ilvE | SAMN05444423_108136 | SAMN05444423_11194 | 2-oxoisovalerate dehydrogenase E1 component. | Branched-chain amino acid aminotransferase. | 0.956 |
PdhB | metB | SAMN05444423_108136 | SAMN05444423_1011389 | 2-oxoisovalerate dehydrogenase E1 component. | Cystathionine gamma-lyase. | 0.825 |
PdhB | vdh | SAMN05444423_108136 | SAMN05444423_107109 | 2-oxoisovalerate dehydrogenase E1 component. | Valine dehydrogenase (NAD+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.991 |
hom | PdhB | SAMN05444423_10321 | SAMN05444423_108136 | Homoserine dehydrogenase. | 2-oxoisovalerate dehydrogenase E1 component. | 0.423 |
hom | hom-2 | SAMN05444423_10321 | SAMN05444423_10528 | Homoserine dehydrogenase. | Homoserine dehydrogenase. | 0.907 |
hom | ilvA | SAMN05444423_10321 | SAMN05444423_11713 | Homoserine dehydrogenase. | L-threonine ammonia-lyase. | 0.760 |
hom | ilvD | SAMN05444423_10321 | SAMN05444423_102656 | Homoserine dehydrogenase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.438 |
hom | ilvD-2 | SAMN05444423_10321 | SAMN05444423_10738 | Homoserine dehydrogenase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.438 |
hom | ilvE | SAMN05444423_10321 | SAMN05444423_11194 | Homoserine dehydrogenase. | Branched-chain amino acid aminotransferase. | 0.941 |
hom | metB | SAMN05444423_10321 | SAMN05444423_1011389 | Homoserine dehydrogenase. | Cystathionine gamma-lyase. | 0.913 |
hom-2 | PdhB | SAMN05444423_10528 | SAMN05444423_108136 | Homoserine dehydrogenase. | 2-oxoisovalerate dehydrogenase E1 component. | 0.423 |
hom-2 | hom | SAMN05444423_10528 | SAMN05444423_10321 | Homoserine dehydrogenase. | Homoserine dehydrogenase. | 0.907 |
hom-2 | ilvA | SAMN05444423_10528 | SAMN05444423_11713 | Homoserine dehydrogenase. | L-threonine ammonia-lyase. | 0.729 |
hom-2 | ilvD | SAMN05444423_10528 | SAMN05444423_102656 | Homoserine dehydrogenase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.438 |
hom-2 | ilvD-2 | SAMN05444423_10528 | SAMN05444423_10738 | Homoserine dehydrogenase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.438 |
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