STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN72240.1D-alanyl-D-alanine carboxypeptidase. (390 aa)    
Predicted Functional Partners:
Tap_1
TAP-like protein.
   
 0.824
EstB_2
CubicO group peptidase, beta-lactamase class C family.
  
     0.668
SFM17681.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.615
AmpH_1
CubicO group peptidase, beta-lactamase class C family.
  
   
 0.610
SFM25121.1
Beta-lactamase.
  
   
 0.497
SFN57073.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.478
SFL64177.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.465
SFN85897.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.445
SFN72197.1
Hypothetical protein.
       0.437
AfsR_1
DNA-binding transcriptional activator of the SARP family.
 
     0.417
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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