STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716895_03827Unannotated protein. (342 aa)    
Predicted Functional Partners:
GCA_000716895_03826
Unannotated protein.
     
 0.979
GCA_000716895_03825
Unannotated protein.
 
   
 0.968
GCA_000716895_06395
Unannotated protein.
 
     0.950
GCA_000716895_00093
Unannotated protein.
    
 0.939
ribBA
Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.939
gltB_2
Unannotated protein.
    
 0.939
GCA_000716895_02941
Unannotated protein.
    
  0.920
GCA_000716895_02858
Unannotated protein.
  
 
 0.915
GCA_000716895_05327
Unannotated protein.
  
  
 0.884
GCA_000716895_03465
Unannotated protein.
  
 
 0.878
Your Current Organism:
Rhodococcus rhodochrous
NCBI taxonomy Id: 1829
Other names: ATCC 13808, Bacterium mycoides roseum, CCUG 47165, CIP 104376, DSM 43241, Gordona rosea, IEGM 62, IFO 16069, IMET 7374, JCM 3202, LMG 5365, LMG:5365, NBRC 16069, NCIB 11147, NCIB:11147, NCTC 10210, NRRL B-16536, NRRL B-2149, R. rhodochrous, Rhodococcus rhodochrous isolate DY5, Rhodococcus rhodochrous isolate DY6, Rhodococcus rhodochrous str. J1, Rhodococcus roseus, Staphylococcus rhodochrous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.