Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000716895_00498 | GCA_000716895_00503 | GCA_000716895_00498 | GCA_000716895_00503 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000716895_00498 | GCA_000716895_04429 | GCA_000716895_00498 | GCA_000716895_04429 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_000716895_00498 | GCA_000716895_04832 | GCA_000716895_00498 | GCA_000716895_04832 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_000716895_00498 | GCA_000716895_06028 | GCA_000716895_00498 | GCA_000716895_06028 | Unannotated protein. | Unannotated protein. | 0.877 |
GCA_000716895_00498 | dnaN | GCA_000716895_00498 | GCA_000716895_04124 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.996 |
GCA_000716895_00498 | polA_2 | GCA_000716895_00498 | GCA_000716895_00075 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
GCA_000716895_00498 | recA | GCA_000716895_00498 | GCA_000716895_03666 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.999 |
GCA_000716895_00498 | rpoA | GCA_000716895_00498 | GCA_000716895_00766 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.927 |
GCA_000716895_00498 | rpoZ | GCA_000716895_00498 | GCA_000716895_01517 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.896 |
GCA_000716895_00498 | yhgF | GCA_000716895_00498 | GCA_000716895_05430 | Unannotated protein. | Unannotated protein. | 0.904 |
GCA_000716895_00503 | GCA_000716895_00498 | GCA_000716895_00503 | GCA_000716895_00498 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000716895_00503 | GCA_000716895_04429 | GCA_000716895_00503 | GCA_000716895_04429 | Unannotated protein. | Unannotated protein. | 0.987 |
GCA_000716895_00503 | GCA_000716895_04832 | GCA_000716895_00503 | GCA_000716895_04832 | Unannotated protein. | Unannotated protein. | 0.953 |
GCA_000716895_00503 | GCA_000716895_06028 | GCA_000716895_00503 | GCA_000716895_06028 | Unannotated protein. | Unannotated protein. | 0.861 |
GCA_000716895_00503 | dnaN | GCA_000716895_00503 | GCA_000716895_04124 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.983 |
GCA_000716895_00503 | polA_2 | GCA_000716895_00503 | GCA_000716895_00075 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.998 |
GCA_000716895_00503 | recA | GCA_000716895_00503 | GCA_000716895_03666 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.978 |
GCA_000716895_00503 | rpoA | GCA_000716895_00503 | GCA_000716895_00766 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.810 |
GCA_000716895_00503 | rpoZ | GCA_000716895_00503 | GCA_000716895_01517 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.665 |
GCA_000716895_00503 | yhgF | GCA_000716895_00503 | GCA_000716895_05430 | Unannotated protein. | Unannotated protein. | 0.776 |
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