STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716895_06309Unannotated protein. (260 aa)    
Predicted Functional Partners:
GCA_000716895_05327
Unannotated protein.
  
 
 0.999
GCA_000716895_05329
Unannotated protein.
  
 
 0.994
GCA_000716895_03981
Unannotated protein.
  
 
 0.992
GCA_000716895_04621
Unannotated protein.
    
 0.990
GCA_000716895_00243
Unannotated protein.
    
 0.981
gcvP
Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.981
GCA_000716895_00245
Unannotated protein.
  
 
 0.977
NCTC630_00762
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.977
bioB
Unannotated protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.976
GCA_000716895_03824
Unannotated protein.
    
 0.976
Your Current Organism:
Rhodococcus rhodochrous
NCBI taxonomy Id: 1829
Other names: ATCC 13808, Bacterium mycoides roseum, CCUG 47165, CIP 104376, DSM 43241, Gordona rosea, IEGM 62, IFO 16069, IMET 7374, JCM 3202, LMG 5365, LMG:5365, NBRC 16069, NCIB 11147, NCIB:11147, NCTC 10210, NRRL B-16536, NRRL B-2149, R. rhodochrous, Rhodococcus rhodochrous isolate DY5, Rhodococcus rhodochrous isolate DY6, Rhodococcus rhodochrous str. J1, Rhodococcus roseus, Staphylococcus rhodochrous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.