Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lepil_1728 | Lepil_1729 | GCA_002009735_02615 | GCA_002009735_02616 | Unannotated protein. | Unannotated protein. | 0.831 |
Lepil_1728 | Lepil_1731 | GCA_002009735_02615 | GCA_002009735_02618 | Unannotated protein. | Unannotated protein. | 0.840 |
Lepil_1728 | Lepil_2713 | GCA_002009735_02615 | GCA_002009735_01977 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.461 |
Lepil_1728 | Lepil_3927 | GCA_002009735_02615 | GCA_002009735_02526 | Unannotated protein. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.416 |
Lepil_1728 | kdsA | GCA_002009735_02615 | GCA_002009735_02619 | Unannotated protein. | Unannotated protein; Belongs to the KdsA family. | 0.884 |
Lepil_1728 | lpxC | GCA_002009735_02615 | GCA_002009735_02199 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.457 |
Lepil_1728 | lpxK | GCA_002009735_02615 | GCA_002009735_00165 | Unannotated protein. | Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.455 |
Lepil_1729 | Lepil_1728 | GCA_002009735_02616 | GCA_002009735_02615 | Unannotated protein. | Unannotated protein. | 0.831 |
Lepil_1729 | Lepil_1731 | GCA_002009735_02616 | GCA_002009735_02618 | Unannotated protein. | Unannotated protein. | 0.999 |
Lepil_1729 | Lepil_2561 | GCA_002009735_02616 | GCA_002009735_03830 | Unannotated protein. | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.681 |
Lepil_1729 | Lepil_2713 | GCA_002009735_02616 | GCA_002009735_01977 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.817 |
Lepil_1729 | Lepil_3927 | GCA_002009735_02616 | GCA_002009735_02526 | Unannotated protein. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.767 |
Lepil_1729 | kdsA | GCA_002009735_02616 | GCA_002009735_02619 | Unannotated protein. | Unannotated protein; Belongs to the KdsA family. | 0.888 |
Lepil_1729 | kdsB | GCA_002009735_02616 | GCA_002009735_03386 | Unannotated protein. | Unannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.605 |
Lepil_1729 | lpxC | GCA_002009735_02616 | GCA_002009735_02199 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.757 |
Lepil_1729 | lpxD | GCA_002009735_02616 | GCA_002009735_00413 | Unannotated protein. | Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.778 |
Lepil_1729 | lpxK | GCA_002009735_02616 | GCA_002009735_00165 | Unannotated protein. | Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.675 |
Lepil_1731 | Lepil_1728 | GCA_002009735_02618 | GCA_002009735_02615 | Unannotated protein. | Unannotated protein. | 0.840 |
Lepil_1731 | Lepil_1729 | GCA_002009735_02618 | GCA_002009735_02616 | Unannotated protein. | Unannotated protein. | 0.999 |
Lepil_1731 | Lepil_2561 | GCA_002009735_02618 | GCA_002009735_03830 | Unannotated protein. | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.487 |
page 1 of 5