GCA_002009735_02806 protein (Leptonema illini)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

GCA_002009735_02806

Unannotated protein. (221 aa)

Predicted Functional Partners:

Lepil_1453

0.943

Lepil_3134

0.829

Lepil_1454

0.797

Lepil_3135

0.778

Lepil_1455

0.685

Lepil_2955

0.677

Lepil_2207

0.637

fliQ

0.636

Lepil_2208

0.636

Lepil_1991

0.632

Your Current Organism:

Leptonema illini

NCBI taxonomy Id: 183
Other names: DSM 21528, L. illini, Leptospira illini, NCTC 11301, strain 3055

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_002009735_02806	Lepil_1453	GCA_002009735_02806	GCA_002009735_00501	Unannotated protein.	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.943
GCA_002009735_02806	Lepil_1454	GCA_002009735_02806	GCA_002009735_00500	Unannotated protein.	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	0.797
GCA_002009735_02806	Lepil_1455	GCA_002009735_02806	GCA_002009735_00499	Unannotated protein.	Unannotated protein.	0.685
GCA_002009735_02806	Lepil_1991	GCA_002009735_02806	GCA_002009735_03175	Unannotated protein.	Unannotated protein.	0.632
GCA_002009735_02806	Lepil_2207	GCA_002009735_02806	GCA_002009735_02150	Unannotated protein.	Unannotated protein.	0.637
GCA_002009735_02806	Lepil_2208	GCA_002009735_02806	GCA_002009735_02149	Unannotated protein.	Unannotated protein; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	0.636
GCA_002009735_02806	Lepil_2955	GCA_002009735_02806	GCA_002009735_01675	Unannotated protein.	Unannotated protein.	0.677
GCA_002009735_02806	Lepil_3134	GCA_002009735_02806	GCA_002009735_01152	Unannotated protein.	Unannotated protein.	0.829
GCA_002009735_02806	Lepil_3135	GCA_002009735_02806	GCA_002009735_01153	Unannotated protein.	Unannotated protein.	0.778
GCA_002009735_02806	fliQ	GCA_002009735_02806	GCA_002009735_02148	Unannotated protein.	Unannotated protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.636
Lepil_1453	GCA_002009735_02806	GCA_002009735_00501	GCA_002009735_02806	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.943
Lepil_1453	Lepil_1454	GCA_002009735_00501	GCA_002009735_00500	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	0.999
Lepil_1453	Lepil_1455	GCA_002009735_00501	GCA_002009735_00499	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.999
Lepil_1453	Lepil_1991	GCA_002009735_00501	GCA_002009735_03175	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.951
Lepil_1453	Lepil_2955	GCA_002009735_00501	GCA_002009735_01675	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.999
Lepil_1454	GCA_002009735_02806	GCA_002009735_00500	GCA_002009735_02806	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	Unannotated protein.	0.797
Lepil_1454	Lepil_1453	GCA_002009735_00500	GCA_002009735_00501	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.999
Lepil_1454	Lepil_1455	GCA_002009735_00500	GCA_002009735_00499	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	Unannotated protein.	0.999
Lepil_1454	Lepil_1991	GCA_002009735_00500	GCA_002009735_03175	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	Unannotated protein.	0.900
Lepil_1454	Lepil_2955	GCA_002009735_00500	GCA_002009735_01675	Unannotated protein; Belongs to the heme-copper respiratory oxidase family.	Unannotated protein.	0.998

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Network Stats

number of nodes:

6

number of edges:

8

average node degree:

2.67

avg. local clustering coefficient:

0.883

expected number of edges:

5

PPI enrichment p-value:

0.134

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1901606

Alpha-amino acid catabolic process

6 of 36

2.33

4.6

3.62e-10

GO:0019441

Tryptophan catabolic process to kynurenine

4 of 5

3.01

4.28

1.37e-08

GO:0009063

Cellular amino acid catabolic process

6 of 49

2.19

4.22

9.97e-10

GO:0044270

Cellular nitrogen compound catabolic process

5 of 74

1.94

2.98

1.95e-07

GO:0019475

L-lysine catabolic process to acetate

2 of 4

2.8

1.88

0.00037

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004061

Arylformamidase activity

4 of 4

3.11

4.31

1.35e-08

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:23608

Mixed, incl. Fermentation, and Arylformamidase activity

6 of 12

2.8

6.14

2.16e-12

CL:23622

Arylformamidase activity, and EutQ-like cupin domain

4 of 5

3.01

4.36

9.82e-09

CL:23609

Fermentation, and L-threonine catabolic process to glycine

2 of 7

2.56

1.19

0.0067

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

mrm00310

Lysine degradation

2 of 30

1.93

0.78

0.0339

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000428

DNA-directed RNA polymerase complex

4 of 179

1.45

1.07

0.0034

GOCC:1902494

Catalytic complex

5 of 452

1.15

0.88

0.0034

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04199

Putative cyclase

3 of 3

3.11

2.82

7.53e-06

PF05853

Beta-keto acid cleavage enzyme

2 of 2

3.11

1.52

0.0018

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