Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lepil_0246 | Lepil_0349 | GCA_002009735_00597 | GCA_002009735_03057 | Unannotated protein. | Unannotated protein. | 0.938 |
Lepil_0246 | Lepil_0949 | GCA_002009735_00597 | GCA_002009735_01719 | Unannotated protein. | Unannotated protein. | 0.862 |
Lepil_0246 | Lepil_3179 | GCA_002009735_00597 | GCA_002009735_01197 | Unannotated protein. | Unannotated protein. | 0.953 |
Lepil_0246 | Lepil_3284 | GCA_002009735_00597 | GCA_002009735_00392 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.656 |
Lepil_0246 | dnaG | GCA_002009735_00597 | GCA_002009735_03495 | Unannotated protein. | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.724 |
Lepil_0246 | nusA | GCA_002009735_00597 | GCA_002009735_02532 | Unannotated protein. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.994 |
Lepil_0246 | rpoA | GCA_002009735_00597 | GCA_002009735_02736 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.762 |
Lepil_0246 | rpoB | GCA_002009735_00597 | GCA_002009735_02704 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Lepil_0246 | rpoC | GCA_002009735_00597 | GCA_002009735_02705 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
Lepil_0246 | sigA | GCA_002009735_00597 | GCA_002009735_03496 | Unannotated protein. | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.762 |
Lepil_0349 | Lepil_0246 | GCA_002009735_03057 | GCA_002009735_00597 | Unannotated protein. | Unannotated protein. | 0.938 |
Lepil_0349 | rpoA | GCA_002009735_03057 | GCA_002009735_02736 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.733 |
Lepil_0349 | rpoB | GCA_002009735_03057 | GCA_002009735_02704 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.855 |
Lepil_0349 | rpoC | GCA_002009735_03057 | GCA_002009735_02705 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.903 |
Lepil_0349 | sigA | GCA_002009735_03057 | GCA_002009735_03496 | Unannotated protein. | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.708 |
Lepil_0949 | Lepil_0246 | GCA_002009735_01719 | GCA_002009735_00597 | Unannotated protein. | Unannotated protein. | 0.862 |
Lepil_0949 | sigA | GCA_002009735_01719 | GCA_002009735_03496 | Unannotated protein. | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.844 |
Lepil_3179 | Lepil_0246 | GCA_002009735_01197 | GCA_002009735_00597 | Unannotated protein. | Unannotated protein. | 0.953 |
Lepil_3179 | rpoA | GCA_002009735_01197 | GCA_002009735_02736 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.873 |
Lepil_3179 | rpoB | GCA_002009735_01197 | GCA_002009735_02704 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.925 |
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