STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05443507_108124Hydrogenase-4 component F. (492 aa)    
Predicted Functional Partners:
SAMN05443507_108121
Ni,Fe-hydrogenase III small subunit.
 
 0.999
SAMN05443507_108123
Ni,Fe-hydrogenase III large subunit.
 
 0.999
SAMN05443507_108126
Formate hydrogenlyase subunit 4.
 
 0.997
SAMN05443507_108125
Hydrogenase-4 component E.
 
 
 0.984
SAMN05443507_102134
NAD(P)H-quinone oxidoreductase subunit 5.
 
0.960
SAMN05443507_11635
NADH-quinone oxidoreductase subunit L.
 
0.960
SAMN05443507_108122
4Fe-4S dicluster domain-containing protein.
 
 0.934
SAMN05443507_10631
Formate dehydrogenase major subunit.
  
 0.887
SAMN05443507_108127
Hydrogenase-4 component B.
 
    
0.818
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 
 0.818
Your Current Organism:
Alicyclobacillus montanus
NCBI taxonomy Id: 1830138
Other names: A. montanus, Alicyclobacillus sp. USBA-GBX-503, CBMAI1927, CMPUJ UGB U503, strain USBA-GBX-503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.