STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBI96439.1Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
OBI96438.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.979
OBI96440.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.687
OBI96424.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.529
OBI99275.1
Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
      
 0.508
apeB
M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Mycobacterium sp. 14657030
NCBI taxonomy Id: 1834078
Other names: M. sp. 1465703.0, Mycobacterium sp. 1465703.0
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