STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBB57700.1Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
OBB57699.1
K+/H+ antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.851
OBB60660.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
OBB60595.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.664
OBB59787.1
rRNA cytosine-C5-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.621
OBB62014.1
Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
    
 0.560
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.510
OBB60659.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.479
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.450
OBB60165.1
Bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.435
OBB62233.1
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
Your Current Organism:
Mycobacterium sp. 85201351886SCH5428379
NCBI taxonomy Id: 1834111
Other names: M. sp. 852013-51886_SCH5428379, Mycobacterium sp. 852013-51886_SCH5428379
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