OBF31636.1 protein (Mycobacterium sp. ACS1612)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBF31636.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)

Predicted Functional Partners:

purA

0.765

OBF31499.1

0.765

OBF31635.1

0.554

OBF31496.1

0.447

OBF31497.1

0.407

Your Current Organism:

Mycobacterium sp. ACS1612

NCBI taxonomy Id: 1834117
Other names: M. sp. ACS1612

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBF31496.1	OBF31497.1	A5724_21145	A5724_21150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OBF31496.1	OBF31499.1	A5724_21145	A5724_21165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
OBF31496.1	OBF31635.1	A5724_21145	A5724_21155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
OBF31496.1	OBF31636.1	A5724_21145	A5724_21170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
OBF31496.1	purA	A5724_21145	A5724_21160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.567
OBF31497.1	OBF31496.1	A5724_21150	A5724_21145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OBF31497.1	OBF31499.1	A5724_21150	A5724_21165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
OBF31497.1	OBF31635.1	A5724_21150	A5724_21155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
OBF31497.1	OBF31636.1	A5724_21150	A5724_21170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
OBF31497.1	purA	A5724_21150	A5724_21160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.437
OBF31499.1	OBF31496.1	A5724_21165	A5724_21145	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
OBF31499.1	OBF31497.1	A5724_21165	A5724_21150	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
OBF31499.1	OBF31635.1	A5724_21165	A5724_21155	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
OBF31499.1	OBF31636.1	A5724_21165	A5724_21170	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
OBF31499.1	purA	A5724_21165	A5724_21160	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.890
OBF31635.1	OBF31496.1	A5724_21155	A5724_21145	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
OBF31635.1	OBF31497.1	A5724_21155	A5724_21150	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
OBF31635.1	OBF31499.1	A5724_21155	A5724_21165	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
OBF31635.1	OBF31636.1	A5724_21155	A5724_21170	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
OBF31635.1	purA	A5724_21155	A5724_21160	Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.810