OBG29018.1 protein (Mycobacterium sp. E3198)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBG29018.1

Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (411 aa)

Predicted Functional Partners:

OBG35714.1

0.972

OBG25658.1

0.910

OBG25657.1

0.899

OBG34822.1

0.890

OBG26921.1

0.860

OBG38608.1

0.840

OBG32323.1

0.840

OBG34395.1

0.816

OBG41595.1

0.781

OBG29012.1

0.666

Your Current Organism:

Mycobacterium sp. E3198

NCBI taxonomy Id: 1834143
Other names: M. sp. E3198

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBG25657.1	OBG25658.1	A5673_08835	A5673_08840	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25657.1	OBG26921.1	A5673_08835	A5673_07150	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25657.1	OBG29018.1	A5673_08835	A5673_05230	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.899
OBG25657.1	OBG32323.1	A5673_08835	A5673_25405	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25657.1	OBG34395.1	A5673_08835	A5673_21875	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996
OBG25657.1	OBG34822.1	A5673_08835	A5673_21030	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25657.1	OBG35714.1	A5673_08835	A5673_19905	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OBG25657.1	OBG38608.1	A5673_08835	A5673_14415	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25657.1	OBG41595.1	A5673_08835	A5673_01075	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OBG25658.1	OBG25657.1	A5673_08840	A5673_08835	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25658.1	OBG26921.1	A5673_08840	A5673_07150	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25658.1	OBG29018.1	A5673_08840	A5673_05230	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.910
OBG25658.1	OBG32323.1	A5673_08840	A5673_25405	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25658.1	OBG34395.1	A5673_08840	A5673_21875	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996
OBG25658.1	OBG34822.1	A5673_08840	A5673_21030	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25658.1	OBG35714.1	A5673_08840	A5673_19905	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OBG25658.1	OBG38608.1	A5673_08840	A5673_14415	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG25658.1	OBG41595.1	A5673_08840	A5673_01075	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OBG26921.1	OBG25657.1	A5673_07150	A5673_08835	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OBG26921.1	OBG25658.1	A5673_07150	A5673_08840	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999