ANU54981.1 protein (Hungateiclostridiaceae bacterium KB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANU54981.1

DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)

Predicted Functional Partners:

ANU54982.1

0.996

ANU55802.2

0.980

ANU55790.1

0.970

ANU52854.1

0.968

ANU54978.1

0.939

ANU54979.1

0.937

ANU54977.1

0.873

ANU53457.1

0.783

ANU55601.1

0.777

ANU55645.1

0.754

Your Current Organism:

Hungateiclostridiaceae bacterium KB18

NCBI taxonomy Id: 1834198
Other names: H. bacterium KB18, Ruminiclostridium sp. KB18

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU52854.1	ANU54981.1	A4V00_01790	A4V00_13670	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ANU52854.1	ANU55601.1	A4V00_01790	A4V00_17170	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
ANU52854.1	ANU55645.1	A4V00_01790	A4V00_17410	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
ANU53457.1	ANU54981.1	A4V00_05065	A4V00_13670	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ANU53457.1	ANU54982.1	A4V00_05065	A4V00_13675	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ANU53457.1	ANU55645.1	A4V00_05065	A4V00_17410	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
ANU54977.1	ANU54978.1	A4V00_13650	A4V00_13655	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
ANU54977.1	ANU54979.1	A4V00_13650	A4V00_13660	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ANU54977.1	ANU54981.1	A4V00_13650	A4V00_13670	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
ANU54977.1	ANU54982.1	A4V00_13650	A4V00_13675	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ANU54978.1	ANU54977.1	A4V00_13655	A4V00_13650	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
ANU54978.1	ANU54979.1	A4V00_13655	A4V00_13660	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
ANU54978.1	ANU54981.1	A4V00_13655	A4V00_13670	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
ANU54978.1	ANU54982.1	A4V00_13655	A4V00_13675	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ANU54979.1	ANU54977.1	A4V00_13660	A4V00_13650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ANU54979.1	ANU54978.1	A4V00_13660	A4V00_13655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriocin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
ANU54979.1	ANU54981.1	A4V00_13660	A4V00_13670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
ANU54979.1	ANU54982.1	A4V00_13660	A4V00_13675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ANU54981.1	ANU52854.1	A4V00_13670	A4V00_01790	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ANU54981.1	ANU53457.1	A4V00_13670	A4V00_05065	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783