ANU55469.1 protein (Hungateiclostridiaceae bacterium KB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANU55469.1

Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)

Predicted Functional Partners:

ANU55468.1

0.961

A4V00_01195

0.826

ANU52588.1

0.798

ANU53553.1

0.798

ANU53468.1

0.797

ANU53226.2

0.795

ANU55637.1

0.793

ANU55614.1

0.792

ANU55397.1

0.783

ANU55585.1

0.783

Your Current Organism:

Hungateiclostridiaceae bacterium KB18

NCBI taxonomy Id: 1834198
Other names: H. bacterium KB18, Ruminiclostridium sp. KB18

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4V00_01195	ANU55469.1	A4V00_01195	A4V00_16435	DNA-binding protein; Incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
ANU52588.1	ANU55469.1	A4V00_00310	A4V00_16435	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ANU53226.2	ANU55469.1	A4V00_03840	A4V00_16435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ANU53468.1	ANU55469.1	A4V00_05120	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
ANU53553.1	ANU55469.1	A4V00_05630	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ANU55397.1	ANU55469.1	A4V00_16035	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ANU55468.1	ANU55469.1	A4V00_16430	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ANU55469.1	A4V00_01195	A4V00_16435	A4V00_01195	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
ANU55469.1	ANU52588.1	A4V00_16435	A4V00_00310	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ANU55469.1	ANU53226.2	A4V00_16435	A4V00_03840	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ANU55469.1	ANU53468.1	A4V00_16435	A4V00_05120	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
ANU55469.1	ANU53553.1	A4V00_16435	A4V00_05630	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ANU55469.1	ANU55397.1	A4V00_16435	A4V00_16035	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ANU55469.1	ANU55468.1	A4V00_16435	A4V00_16430	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ANU55469.1	ANU55585.1	A4V00_16435	A4V00_17085	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ANU55469.1	ANU55614.1	A4V00_16435	A4V00_17240	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
ANU55469.1	ANU55637.1	A4V00_16435	A4V00_17370	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ANU55585.1	ANU55469.1	A4V00_17085	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ANU55614.1	ANU55469.1	A4V00_17240	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
ANU55637.1	ANU55469.1	A4V00_17370	A4V00_16435	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793