STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHV47462.1GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
OHV56897.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.604
BCD48_16205
Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.604
OHV49777.1
Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.541
BCD48_12355
Ribosomal-protein-alanine N-acetyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.488
OHV49728.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
 0.457
OHV44837.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
   
 0.439
BCD48_13425
GCN5 family acetyltransferase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.408
OHV49772.1
acetyl-CoA carboxylase subunit alpha/beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.406
Your Current Organism:
Frankia sp. BMG536
NCBI taxonomy Id: 1834512
Other names: F. sp. BMG5.36, Frankia sp. BMG5.36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.