STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHV53474.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (107 aa)    
Predicted Functional Partners:
OHV52499.1
Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
OHV57165.1
RNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.763
OHV51594.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.761
OHV53092.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.760
OHV73961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.756
OHV66553.1
Maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
OHV65189.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.625
cas2
CRISPR-associated endonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.614
OHV52119.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.551
OHV53475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.539
Your Current Organism:
Frankia sp. BMG536
NCBI taxonomy Id: 1834512
Other names: F. sp. BMG5.36, Frankia sp. BMG5.36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.