STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDE83_002900Amfr protein. (251 aa)    
Predicted Functional Partners:
DDE83_004705
Cell differentiation protein rcd1.
    
 0.962
DDE83_001484
Not1-domain-containing protein.
   
 0.962
DDE83_003297
Ccr4-not transcription complex.
    
 0.961
DDE83_000087
Nucleic acid binding.
    
 0.960
DDE83_004830
CAF1-domain-containing protein.
   
 0.954
DDE83_003398
Glucose-repressible alcohol dehydrogenase-like protein transcriptional effector.
    
 0.949
DDE83_002767
Ring finger membrane protein.
    
 
 0.900
DDE83_008768
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.893
DDE83_003548
Exosome complex exonuclease rrp41.
    
 
 0.861
DDE83_003143
Swi-snf complex subunit.
    
 0.844
Your Current Organism:
Stemphylium lycopersici
NCBI taxonomy Id: 183478
Other names: CBS 116585 [[Stemphylium xanthosomatis]], CBS 120325 [[Stemphylium sophorae]], CBS 120326 [[Stemphylium oblongum]], CBS 122639, CBS 122803 [[Stemphylium pyrina]], CBS 124980 [[Stemphylium pruni]], CBS 124981 [[Stemphylium plantaginis]], IMI 98083 [[Stemphylium xanthosomatis]], S. lycopersici, Stemphylium oblongum, Stemphylium oblongum Yong Wang bis & X.G. Zhang, 2009, Stemphylium plantaginis, Stemphylium plantaginis Yong Wang bis & X.G. Zhang, 2006, Stemphylium pruni, Stemphylium pruni Yong Wang bis & X.G. Zhang, 2006, Stemphylium pyrina, Stemphylium pyrina Yong Wang bis & X.G. Zhang, 2009, Stemphylium sophorae, Stemphylium sophorae Yong Wang bis & X.G. Zhang, 2009, Stemphylium xanthosomae, Stemphylium xanthosomatis
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