STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDE83_002747Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (534 aa)    
Predicted Functional Partners:
DDE83_000432
20s-pre-rrna d-site endonuclease nob1.
   
 0.999
DDE83_005589
40s ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.
    
 0.998
DDE83_004886
40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.
    
 0.997
DDE83_004527
Ribosomal protein S7e.
    
  0.994
DDE83_001232
40s ribosomal protein s9.
   
  0.994
DDE83_000275
40s ribosomal protein s6.
   
  0.994
DDE83_007343
Casein kinase I isoform epsilon; Belongs to the protein kinase superfamily.
    
 0.988
DDE83_002267
Low-temperature viability protein ltv1.
   
 0.981
DDE83_000583
40s ribosomal protein s3; Belongs to the universal ribosomal protein uS3 family.
   
 0.950
DDE83_003657
40s ribosomal protein s15; Belongs to the universal ribosomal protein uS19 family.
    
 0.939
Your Current Organism:
Stemphylium lycopersici
NCBI taxonomy Id: 183478
Other names: CBS 116585 [[Stemphylium xanthosomatis]], CBS 120325 [[Stemphylium sophorae]], CBS 120326 [[Stemphylium oblongum]], CBS 122639, CBS 122803 [[Stemphylium pyrina]], CBS 124980 [[Stemphylium pruni]], CBS 124981 [[Stemphylium plantaginis]], IMI 98083 [[Stemphylium xanthosomatis]], S. lycopersici, Stemphylium oblongum, Stemphylium oblongum Yong Wang bis & X.G. Zhang, 2009, Stemphylium plantaginis, Stemphylium plantaginis Yong Wang bis & X.G. Zhang, 2006, Stemphylium pruni, Stemphylium pruni Yong Wang bis & X.G. Zhang, 2006, Stemphylium pyrina, Stemphylium pyrina Yong Wang bis & X.G. Zhang, 2009, Stemphylium sophorae, Stemphylium sophorae Yong Wang bis & X.G. Zhang, 2009, Stemphylium xanthosomae, Stemphylium xanthosomatis
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