Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DDE83_000305 | DDE83_000794 | A0A364NGP6 | A0A364NEQ2 | Tryptophan synthase. | Cytochrome p450 76c3. | 0.671 |
DDE83_000305 | DDE83_003264 | A0A364NGP6 | A0A364N7Z3 | Tryptophan synthase. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.788 |
DDE83_000305 | DDE83_004289 | A0A364NGP6 | A0A364N4Z5 | Tryptophan synthase. | Exodeoxyribonuclease 1. | 0.575 |
DDE83_000482 | DDE83_000794 | A0A364NFM1 | A0A364NEQ2 | 3-5 exonuclease helicase. | Cytochrome p450 76c3. | 0.570 |
DDE83_000482 | DDE83_004155 | A0A364NFM1 | A0A364N641 | 3-5 exonuclease helicase. | Dna repair protein rad50. | 0.995 |
DDE83_000482 | DDE83_004289 | A0A364NFM1 | A0A364N4Z5 | 3-5 exonuclease helicase. | Exodeoxyribonuclease 1. | 0.999 |
DDE83_000482 | DDE83_005041 | A0A364NFM1 | A0A364N304 | 3-5 exonuclease helicase. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.998 |
DDE83_000794 | DDE83_000305 | A0A364NEQ2 | A0A364NGP6 | Cytochrome p450 76c3. | Tryptophan synthase. | 0.671 |
DDE83_000794 | DDE83_000482 | A0A364NEQ2 | A0A364NFM1 | Cytochrome p450 76c3. | 3-5 exonuclease helicase. | 0.570 |
DDE83_000794 | DDE83_003051 | A0A364NEQ2 | A0A364N8E9 | Cytochrome p450 76c3. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.475 |
DDE83_000794 | DDE83_003264 | A0A364NEQ2 | A0A364N7Z3 | Cytochrome p450 76c3. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.709 |
DDE83_000794 | DDE83_003833 | A0A364NEQ2 | A0A364N625 | Cytochrome p450 76c3. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.484 |
DDE83_000794 | DDE83_004155 | A0A364NEQ2 | A0A364N641 | Cytochrome p450 76c3. | Dna repair protein rad50. | 0.494 |
DDE83_000794 | DDE83_004289 | A0A364NEQ2 | A0A364N4Z5 | Cytochrome p450 76c3. | Exodeoxyribonuclease 1. | 0.466 |
DDE83_000794 | DDE83_005041 | A0A364NEQ2 | A0A364N304 | Cytochrome p450 76c3. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.468 |
DDE83_000794 | MED17 | A0A364NEQ2 | A0A364NGP7 | Cytochrome p450 76c3. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.489 |
DDE83_000794 | MED6 | A0A364NEQ2 | A0A364N831 | Cytochrome p450 76c3. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.480 |
DDE83_003051 | DDE83_000794 | A0A364N8E9 | A0A364NEQ2 | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | Cytochrome p450 76c3. | 0.475 |
DDE83_003051 | DDE83_003833 | A0A364N8E9 | A0A364N625 | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.996 |
DDE83_003051 | MED17 | A0A364N8E9 | A0A364NGP7 | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.996 |
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