Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DDE83_000745 | DDE83_000831 | A0A364NF57 | A0A364NER4 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | N-glycosylase dna lyase. | 0.597 |
DDE83_000745 | DDE83_001186 | A0A364NF57 | A0A364NDS4 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Sister chromatid cohesion protein eso1. | 0.481 |
DDE83_000745 | DDE83_002348 | A0A364NF57 | A0A364NAD8 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Sister chromatid cohesion protein eso1. | 0.481 |
DDE83_000745 | DDE83_006411 | A0A364NF57 | A0A364MZ33 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA polymerase. | 0.510 |
DDE83_000745 | DDE83_006754 | A0A364NF57 | A0A364MYT0 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.983 |
DDE83_000745 | FEN1 | A0A364NF57 | A0A364MU58 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.845 |
DDE83_000831 | DDE83_000745 | A0A364NER4 | A0A364NF57 | N-glycosylase dna lyase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.597 |
DDE83_000831 | DDE83_001186 | A0A364NER4 | A0A364NDS4 | N-glycosylase dna lyase. | Sister chromatid cohesion protein eso1. | 0.669 |
DDE83_000831 | DDE83_002348 | A0A364NER4 | A0A364NAD8 | N-glycosylase dna lyase. | Sister chromatid cohesion protein eso1. | 0.669 |
DDE83_000831 | DDE83_003065 | A0A364NER4 | A0A364N8F5 | N-glycosylase dna lyase. | S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates. | 0.757 |
DDE83_000831 | DDE83_006411 | A0A364NER4 | A0A364MZ33 | N-glycosylase dna lyase. | DNA polymerase. | 0.580 |
DDE83_000831 | DDE83_006446 | A0A364NER4 | A0A364MZF1 | N-glycosylase dna lyase. | Dna-(Apurinic or apyrimidinic site) lyase. | 0.587 |
DDE83_000831 | DDE83_006504 | A0A364NER4 | A0A364MYY6 | N-glycosylase dna lyase. | DNA binding methylated-DNA--cysteine S-methyltransferase. | 0.617 |
DDE83_000831 | DDE83_006754 | A0A364NER4 | A0A364MYT0 | N-glycosylase dna lyase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.708 |
DDE83_000831 | FEN1 | A0A364NER4 | A0A364MU58 | N-glycosylase dna lyase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.612 |
DDE83_000831 | NTH1 | A0A364NER4 | A0A364NDB9 | N-glycosylase dna lyase. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.648 |
DDE83_001186 | DDE83_000745 | A0A364NDS4 | A0A364NF57 | Sister chromatid cohesion protein eso1. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.481 |
DDE83_001186 | DDE83_000831 | A0A364NDS4 | A0A364NER4 | Sister chromatid cohesion protein eso1. | N-glycosylase dna lyase. | 0.669 |
DDE83_001186 | DDE83_002348 | A0A364NDS4 | A0A364NAD8 | Sister chromatid cohesion protein eso1. | Sister chromatid cohesion protein eso1. | 0.707 |
DDE83_001186 | DDE83_006411 | A0A364NDS4 | A0A364MZ33 | Sister chromatid cohesion protein eso1. | DNA polymerase. | 0.960 |
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