Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KII00480.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)    
Predicted Functional Partners:
KIH96696.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.670
KII00524.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.641
KIH98459.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.626
KIH99309.1
Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.619
KIH99319.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
KIH96874.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
KII00187.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
KIH98075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.521
KIH98612.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
KIH98567.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
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