STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KII00229.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
KII00230.1
AcrR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.879
KIH99238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
KII00539.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.581
KIH99642.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.581
KIH97812.1
Zinc finger CDGSH type superfamily protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.545
KIH99201.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
KII00225.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
KII00235.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.496
KIH96670.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.495
arcA
Arginine deiminase; Catalyzes the degradation of arginine to citruline and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.493
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.