Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KIH99875.1PDZ/DHR/GLGF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
KIH99874.1
Molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.712
KIH99872.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
KIH99873.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
KIH99925.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
KIH99475.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
KIH98559.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.434
KIH98557.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.425
whiB-5
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.421
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
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