STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIH99279.1Ricin-type beta-trefoil lectin domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)    
Predicted Functional Partners:
KIH98726.1
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
 0.946
KIH99516.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.676
KIH98271.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.570
KIH97489.1
Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.467
KIH99097.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.460
KIH97316.1
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.455
xylA
Xylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family.
    
 0.452
KIH99504.1
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.448
KII00172.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.441
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
     
  0.439
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
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