STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIH96694.1Rhomboid family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
KIH97111.1
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.751
KIH96693.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
KIH96695.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
KIH98841.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.568
KIH98186.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.568
KIH96926.1
SPFH/Band 7/PHB domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.568
tatA
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.544
KIH96475.1
Translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.544
KIH98974.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
0.543
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.508
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
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