STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFV66506.1Integrase. (162 aa)    
Predicted Functional Partners:
OFV65856.1
Hef nuclease.
   
 0.953
OFV66697.1
Conserved hypothetical protein, secreted.
    
 0.948
OFV66656.1
Replication protein A.
    
 0.940
OFV65699.1
Replication protein A.
    
 0.940
tbp
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
    
 
 0.887
OFV66039.1
Histone deacetylase.
  
 
 0.762
OFV65686.1
Histone deacetylase.
  
 
 0.760
rpoK
RNA polymerase Rpb6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
    
 
 0.705
OFV66456.1
Small GTP-binding protein domain protein.
   
 0.700
rpoH
Protein containing RNA polymerase, subunit H/Rpb5; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
    
 
 0.691
Your Current Organism:
Syntrophoarchaeum butanivorans
NCBI taxonomy Id: 1839936
Other names: C. Syntrophoarchaeum butanivorans, Candidatus Syntrophoarchaeum butanivorans, Euryarchaeota archaeon BOX1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.