Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAT80847.1 | GAT80848.1 | STXM2123_1549 | STXM2123_1548 | Hypothetical protein. | Transcriptional regulator. | 0.773 |
GAT80847.1 | GAT80849.1 | STXM2123_1549 | STXM2123_1550 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GAT80847.1 | prfA | STXM2123_1549 | STXM2123_1546 | Hypothetical protein. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.497 |
GAT80847.1 | rho | STXM2123_1549 | STXM2123_1551 | Hypothetical protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.518 |
GAT80847.1 | rpmE | STXM2123_1549 | STXM2123_1547 | Hypothetical protein. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.773 |
GAT80848.1 | GAT80847.1 | STXM2123_1548 | STXM2123_1549 | Transcriptional regulator. | Hypothetical protein. | 0.773 |
GAT80848.1 | GAT80849.1 | STXM2123_1548 | STXM2123_1550 | Transcriptional regulator. | Hypothetical protein. | 0.773 |
GAT80848.1 | GAT82867.1 | STXM2123_1548 | STXM2123_3567 | Transcriptional regulator. | Transcriptional regulator. | 0.503 |
GAT80848.1 | hpf | STXM2123_1548 | STXM2123_5612 | Transcriptional regulator. | Hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.519 |
GAT80848.1 | prfA | STXM2123_1548 | STXM2123_1546 | Transcriptional regulator. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.560 |
GAT80848.1 | recF | STXM2123_1548 | STXM2123_5031 | Transcriptional regulator. | Recombinase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.549 |
GAT80848.1 | rho | STXM2123_1548 | STXM2123_1551 | Transcriptional regulator. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.578 |
GAT80848.1 | rpmE | STXM2123_1548 | STXM2123_1547 | Transcriptional regulator. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.801 |
GAT80848.1 | sepF | STXM2123_1548 | STXM2123_2151 | Transcriptional regulator. | Conserved hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.536 |
GAT80848.1 | sepF-2 | STXM2123_1548 | STXM2123_4758 | Transcriptional regulator. | Cell division protein SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.498 |
GAT80849.1 | GAT80847.1 | STXM2123_1550 | STXM2123_1549 | Hypothetical protein. | Hypothetical protein. | 0.773 |
GAT80849.1 | GAT80848.1 | STXM2123_1550 | STXM2123_1548 | Hypothetical protein. | Transcriptional regulator. | 0.773 |
GAT80849.1 | prfA | STXM2123_1550 | STXM2123_1546 | Hypothetical protein. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.497 |
GAT80849.1 | rho | STXM2123_1550 | STXM2123_1551 | Hypothetical protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.518 |
GAT80849.1 | rpmE | STXM2123_1550 | STXM2123_1547 | Hypothetical protein. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.773 |
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