STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)    
Predicted Functional Partners:
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 0.999
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.999
LOC111663395
WD_REPEATS_REGION domain-containing protein.
    
 0.997
atg3
Autophagy-related protein 3.
    
 0.997
LOC111647741
GABA(A) receptor-associated protein like 2.
   
 0.984
gabarap
GABA(A) receptor-associated protein b.
   
 0.984
ENSSLDP00000009840
Uncharacterized protein.
   
 0.982
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.976
ENSSLDP00000012480
Autophagy_N domain-containing protein.
    
 0.976
LOC111669946
Zgc:92606.
   
 0.974
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.