STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
splBSpore photoproduct lyase; OdinLCB4_01670 NODE_2_length_130697_cov_3.16084_ID_3_2; arCOG01290. (342 aa)    
Predicted Functional Partners:
OLS18467.1
Hypothetical protein; OdinLCB4_01680 NODE_2_length_130697_cov_3.16084_ID_3_3.
       0.550
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
     
 0.460
nrdZ
Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
 
     0.442
miaB_5
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; OdinLCB4_11960 NODE_1_length_1181447_cov_4.38286_ID_1_857; IPR005839;IPR006466;IPR020612;IPR007197;IPR013848;IPR02340 4;IPR006638;IPR023970; arCOG01358.
 
   
 0.423
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.