STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
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[Homology]
Score
dapEPutative succinyl-diaminopimelate desuccinylase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine. (354 aa)    
Predicted Functional Partners:
argD
Acetylornithine/acetyl-lysine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.
 
 
 0.984
argC2
N-acetyl-gamma-glutamyl-phosphate/N-acetyl- gamma-aminoadipyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.
  
 0.976
argB
Acetylglutamate/acetylaminoadipate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily.
 
 
 0.975
lysX
Alpha-aminoadipate--LysW ligase LysX; OdinLCB4_04380 NODE_1_length_1181447_cov_4.38286_ID_1_127; IPR016185;IPR013651;IPR013816;IPR011761;IPR013815;IPR00466 6; arCOG01589.
 
 
 0.911
argG
Argininosuccinate synthase; OdinLCB4_14020 NODE_1_length_1181447_cov_4.38286_ID_1_1058; IPR024074;IPR001518;IPR014729;IPR018223;IPR023434; arCOG00112; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.903
pyrD
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.875
allB
Allantoinase; OdinLCB4_06900 NODE_1_length_1181447_cov_4.38286_ID_1_372; IPR004722;IPR006680;IPR011059;IPR002195; arCOG00689.
  
 
 0.857
lysA
Diaminopimelate decarboxylase; OdinLCB4_06060 NODE_1_length_1181447_cov_4.38286_ID_1_290; IPR022643;IPR022644;IPR000183;IPR029066;IPR009006; arCOG02268.
    
 0.852
ape2
Leucyl aminopeptidase; OdinLCB4_02750 NODE_2_length_130697_cov_3.16084_ID_3_109; IPR001930;IPR014782;IPR024571; arCOG02969.
 
 0.846
OLS18165.1
2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy- phosphogluconate aldolase; OdinLCB4_14040 NODE_1_length_1181447_cov_4.38286_ID_1_1060; IPR002220;IPR013785; arCOG04172.
    
 0.842
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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