STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysADiaminopimelate decarboxylase; OdinLCB4_06060 NODE_1_length_1181447_cov_4.38286_ID_1_290; IPR022643;IPR022644;IPR000183;IPR029066;IPR009006; arCOG02268. (394 aa)    
Predicted Functional Partners:
OLS17211.1
Putative aspartokinase; OdinLCB4_04150 NODE_1_length_1181447_cov_4.38286_ID_1_104; IPR001048;IPR002912;IPR001341;IPR027795;IPR005260; arCOG00861; Belongs to the aspartokinase family.
  
 0.987
hom
Homoserine dehydrogenase; OdinLCB4_13090 NODE_1_length_1181447_cov_4.38286_ID_1_965; IPR019811;IPR005106;IPR016040;IPR022697;IPR001342; arCOG01351.
 
 
 0.918
argH
Argininosuccinate lyase; OdinLCB4_14010 NODE_1_length_1181447_cov_4.38286_ID_1_1057; IPR008948;IPR000362;IPR009049;IPR024083;IPR020557;IPR02941 9;IPR022761; arCOG01748.
 
 
 0.904
asd
Aspartate-semialdehyde dehydrogenase; OdinLCB4_04020 NODE_1_length_1181447_cov_4.38286_ID_1_91; IPR000534;IPR012080;IPR012280;IPR005676;IPR016040; arCOG00494.
 
 
 0.887
argD
Acetylornithine/acetyl-lysine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.
 
 
 0.886
argG
Argininosuccinate synthase; OdinLCB4_14020 NODE_1_length_1181447_cov_4.38286_ID_1_1058; IPR024074;IPR001518;IPR014729;IPR018223;IPR023434; arCOG00112; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.875
gbh
Guanidinobutyrase; OdinLCB4_13710 NODE_1_length_1181447_cov_4.38286_ID_1_1027; IPR006035;IPR023696;IPR005925;IPR020855; arCOG01700; Belongs to the arginase family.
  
 
 0.863
dapE
Putative succinyl-diaminopimelate desuccinylase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine.
    
 0.852
OLS18165.1
2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy- phosphogluconate aldolase; OdinLCB4_14040 NODE_1_length_1181447_cov_4.38286_ID_1_1060; IPR002220;IPR013785; arCOG04172.
 
  
 0.846
ramA
(R)-stereoselective amidase; OdinLCB4_04300 NODE_1_length_1181447_cov_4.38286_ID_1_119; IPR003010;IPR001110; arCOG00062.
    
 0.829
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.