STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS17451.1tRNA (guanine(10)-N2)-dimethyltransferase; OdinLCB4_06610 NODE_1_length_1181447_cov_4.38286_ID_1_345; IPR029063;IPR000241; arCOG00047. (340 aa)    
Predicted Functional Partners:
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
  
 0.865
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P).
  
   0.861
tgtA_1
tRNA-guanine(15) transglycosylase; OdinLCB4_06120 NODE_1_length_1181447_cov_4.38286_ID_1_296; IPR015947;IPR002478;IPR029402;IPR004521; arCOG00991.
 
  
 0.709
rtcA
RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
   
    0.690
rpoL
DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.
 
    0.671
obgE
GTPase ObgE/CgtA; OdinLCB4_11810 NODE_1_length_1181447_cov_4.38286_ID_1_842; IPR031167;IPR027417;IPR010674;IPR006073; arCOG00352.
  
    0.655
OLS17526.1
Hypothetical protein; OdinLCB4_07410 NODE_1_length_1181447_cov_4.38286_ID_1_420; IPR002478;IPR015947;IPR004521;IPR005155; arCOG00993.
   
    0.652
OLS17510.1
Hypothetical protein; OdinLCB4_07230 NODE_1_length_1181447_cov_4.38286_ID_1_404; IPR007064; arCOG04149.
   
    0.622
OLS17918.1
Putative Brix domain-containing ribosomal biogenesis protein; OdinLCB4_11510 NODE_1_length_1181447_cov_4.38286_ID_1_813; IPR007109;IPR004154; arCOG03247.
   
    0.619
trm1
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase; OdinLCB4_06850 NODE_1_length_1181447_cov_4.38286_ID_1_367; IPR002905;IPR029063; arCOG01219; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
  
 
 0.610
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.