STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligT2'-5'-RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (187 aa)    
Predicted Functional Partners:
cca
CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
       0.838
OLS17453.1
Hypothetical protein; OdinLCB4_06630 NODE_1_length_1181447_cov_4.38286_ID_1_347; IPR022803;IPR002739; arCOG01043; Belongs to the UPF0201 family.
       0.668
coaE
Dephospho-CoA kinase; OdinLCB4_06640 NODE_1_length_1181447_cov_4.38286_ID_1_348; IPR027417; arCOG01045.
       0.668
ftsH
ATP-dependent zinc metalloprotease FtsH; OdinLCB4_06650 NODE_1_length_1181447_cov_4.38286_ID_1_349; IPR027417;IPR003960;IPR003959;IPR003593; arCOG04163; Belongs to the AAA ATPase family.
       0.598
pncC
Nicotinamide-nucleotide amidohydrolase PncC; OdinLCB4_06340 NODE_1_length_1181447_cov_4.38286_ID_1_318; IPR001453; arCOG00215.
 
   
 0.532
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp).
     
 0.457
rtcB
tRNA-splicing ligase RtcB; OdinLCB4_12270 NODE_1_length_1181447_cov_4.38286_ID_1_886; IPR001233; arCOG04246; Belongs to the RtcB family.
     
 0.444
nrdZ
Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.405
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.