STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS17474.1Hypothetical protein; OdinLCB4_06860 NODE_1_length_1181447_cov_4.38286_ID_1_368; IPR010982;IPR001387;IPR020886; arCOG04152. (317 aa)    
Predicted Functional Partners:
trm1
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase; OdinLCB4_06850 NODE_1_length_1181447_cov_4.38286_ID_1_367; IPR002905;IPR029063; arCOG01219; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
       0.758
OLS17475.1
Hypothetical protein; OdinLCB4_06870 NODE_1_length_1181447_cov_4.38286_ID_1_369; IPR002746; arCOG01921.
       0.656
carS
Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.623
OLS17510.1
Hypothetical protein; OdinLCB4_07230 NODE_1_length_1181447_cov_4.38286_ID_1_404; IPR007064; arCOG04149.
  
   
 0.601
pus10
tRNA pseudouridine synthase Pus10; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
  
     0.564
smc_8
Chromosome partition protein Smc; OdinLCB4_05670 NODE_1_length_1181447_cov_4.38286_ID_1_254; arCOG01159.
 
     0.563
mptD
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).
  
     0.519
OLS17481.1
Hypothetical protein; OdinLCB4_06930 NODE_1_length_1181447_cov_4.38286_ID_1_375; IPR008532; arCOG01695.
 
     0.502
OLS17137.1
Hypothetical protein; OdinLCB4_03410 NODE_1_length_1181447_cov_4.38286_ID_1_30; IPR019151; arCOG00348.
  
     0.497
dnaG
DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
     0.467
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.