STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS17526.1Hypothetical protein; OdinLCB4_07410 NODE_1_length_1181447_cov_4.38286_ID_1_420; IPR002478;IPR015947;IPR004521;IPR005155; arCOG00993. (193 aa)    
Predicted Functional Partners:
obgE
GTPase ObgE/CgtA; OdinLCB4_11810 NODE_1_length_1181447_cov_4.38286_ID_1_842; IPR031167;IPR027417;IPR010674;IPR006073; arCOG00352.
   
 
 0.966
OLS17918.1
Putative Brix domain-containing ribosomal biogenesis protein; OdinLCB4_11510 NODE_1_length_1181447_cov_4.38286_ID_1_813; IPR007109;IPR004154; arCOG03247.
   
 
 0.964
OLS17527.1
tRNA (cytosine(49)-C(5))-methyltransferase; OdinLCB4_07420 NODE_1_length_1181447_cov_4.38286_ID_1_421; IPR001678;IPR023267;IPR011023;IPR018314;IPR029063; arCOG00973.
 
 
 0.960
rpl10
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
 
 0.960
rps8e
30S ribosomal protein S8e; OdinLCB4_13400 NODE_1_length_1181447_cov_4.38286_ID_1_996; IPR018283;IPR022309;IPR001047;IPR020919; arCOG04154.
   
 
 0.945
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.
  
 
 0.939
rpl30
50S ribosomal protein L30P; OdinLCB4_12850 NODE_1_length_1181447_cov_4.38286_ID_1_942; IPR016082;IPR005997;IPR023106;IPR018038; arCOG04086.
  
 
 0.913
rpoL
DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.
   
    0.905
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
 0.902
pnp
Polyribonucleotide nucleotidyltransferase; OdinLCB4_07200 NODE_1_length_1181447_cov_4.38286_ID_1_401; IPR004088;IPR019964;IPR004087; arCOG04150.
   
 
  0.900
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.