STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS17556.1Hypothetical protein; OdinLCB4_07740 NODE_1_length_1181447_cov_4.38286_ID_1_450; IPR007171;IPR023131; arCOG04171. (139 aa)    
Predicted Functional Partners:
ydaP
Putative thiamine pyrophosphate-containing protein YdaP; OdinLCB4_07750 NODE_1_length_1181447_cov_4.38286_ID_1_451; IPR029061;IPR000399;IPR029035;IPR012001;IPR012000;IPR01176 6; arCOG01999; Belongs to the TPP enzyme family.
       0.723
pcm
Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
       0.658
OLS18052.1
Hypothetical protein; OdinLCB4_12900 NODE_1_length_1181447_cov_4.38286_ID_1_947; IPR002809; arCOG02673.
  
     0.593
tfe
Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...]
  
     0.577
OLS18581.1
Hypothetical protein; OdinLCB4_02830 NODE_2_length_130697_cov_3.16084_ID_3_117; IPR014426; arCOG00969; Belongs to the UPF0282 family.
  
   
 0.572
OLS17726.1
Hypothetical protein; OdinLCB4_09510 NODE_1_length_1181447_cov_4.38286_ID_1_620; IPR019204; arCOG04351.
  
     0.557
pyrE_2
Orotate phosphoribosyltransferase; OdinLCB4_07770 NODE_1_length_1181447_cov_4.38286_ID_1_453; IPR000836;IPR029057; arCOG00028.
 
     0.459
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
 
     0.443
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.