STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radBDNA repair and recombination protein RadB; OdinLCB4_10240 NODE_1_length_1181447_cov_4.38286_ID_1_687; IPR004504;IPR020588;IPR027417; arCOG00417. (230 aa)    
Predicted Functional Partners:
yfcE
Phosphodiesterase YfcE; OdinLCB4_10250 NODE_1_length_1181447_cov_4.38286_ID_1_688; IPR024654;IPR000979;IPR011152;IPR029052; arCOG01143.
 
 
 
 0.897
OLS18744.1
DNA double-strand break repair protein Mre11; OdinLCB4_00910 NODE_3_length_93594_cov_3.76123_ID_5_49; IPR029052;IPR024654; arCOG00397.
 
 0.855
fen
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...]
  
 0.845
smc_2
Chromosome partition protein Smc; OdinLCB4_02420 NODE_2_length_130697_cov_3.16084_ID_3_77; IPR027417;IPR003395; arCOG00373.
  
 0.841
rpa
Replication factor A; OdinLCB4_08890 NODE_1_length_1181447_cov_4.38286_ID_1_563; IPR012340;IPR004365;IPR013955; arCOG01510.
 
 0.827
pcn
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.
 
 0.800
carS
Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.797
OLS18195.1
Hypothetical protein; OdinLCB4_14340 NODE_1_length_1181447_cov_4.38286_ID_1_1090; IPR012340; arCOG01510.
 
 0.774
dbh
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis.
  
 0.763
OLS17794.1
ATP-dependent DNA helicase; OdinLCB4_10260 NODE_1_length_1181447_cov_4.38286_ID_1_689; IPR027417;IPR006555;IPR010643;IPR006554;IPR010614;IPR01401 3; arCOG00770.
  
 0.753
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.