STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspSAspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn). (417 aa)    
Predicted Functional Partners:
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 0.996
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A; OdinLCB4_10610 NODE_1_length_1181447_cov_4.38286_ID_1_724; IPR023631;IPR000120; arCOG01717.
  
 0.950
gatC
Glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
   
 0.937
gatA_1
Glutamyl-tRNA(Gln) amidotransferase subunit A; OdinLCB4_10600 NODE_1_length_1181447_cov_4.38286_ID_1_723; IPR023631;IPR000120; arCOG01717.
  
 0.933
leuS
Leucine--tRNA ligase; OdinLCB4_13170 NODE_1_length_1181447_cov_4.38286_ID_1_973; IPR020791;IPR009080;IPR002300;IPR004493;IPR009008;IPR01315 5;IPR014729; arCOG00809; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.909
ileS
Isoleucine--tRNA ligase; OdinLCB4_04160 NODE_1_length_1181447_cov_4.38286_ID_1_105; IPR009080;IPR023585;IPR009008;IPR014729;IPR002301;IPR00141 2;IPR013155;IPR002300; arCOG00807; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.880
metG_1
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.
  
 
 0.878
metG_2
Methionine--tRNA ligase; OdinLCB4_08910 NODE_1_length_1181447_cov_4.38286_ID_1_565; IPR012340;IPR002547;IPR004495; arCOG01136.
  
 
 0.878
argS
Arginine--tRNA ligase; OdinLCB4_14690 NODE_1_length_1181447_cov_4.38286_ID_1_1125; IPR001278;IPR009080;IPR005148;IPR001412;IPR008909;IPR01472 9; arCOG00487; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.874
gatD
Glutamyl-tRNA(Gln) amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
 
 
 0.856
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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