STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps1130S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (169 aa)    
Predicted Functional Partners:
rps7
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
  
 0.999
OLS18766.1
Hypothetical protein; OdinLCB4_01130 NODE_3_length_93594_cov_3.76123_ID_5_71; IPR004977; arCOG04327.
   
 0.999
OLS17276.1
Hypothetical protein; OdinLCB4_04810 NODE_1_length_1181447_cov_4.38286_ID_1_170; IPR000892; arCOG04305.
   
 0.999
rps12
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 0.999
rpl30e
50S ribosomal protein L30e; OdinLCB4_05870 NODE_1_length_1181447_cov_4.38286_ID_1_274; IPR029064;IPR000231;IPR004038;IPR022991; arCOG01752; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 
 0.999
rpoB1
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 0.999
rps10
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.999
pnp
Polyribonucleotide nucleotidyltransferase; OdinLCB4_07200 NODE_1_length_1181447_cov_4.38286_ID_1_401; IPR004088;IPR019964;IPR004087; arCOG04150.
  
 0.999
rio1
RIO-type serine/threonine-protein kinase Rio1; OdinLCB4_07210 NODE_1_length_1181447_cov_4.38286_ID_1_402; IPR018935;IPR017407;IPR000687;IPR011009; arCOG01180.
    
 0.999
eIF1A
Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
 0.999
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.