STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS18065.1Hypothetical protein; OdinLCB4_13040 NODE_1_length_1181447_cov_4.38286_ID_1_960; IPR029052;IPR024173;IPR004843; arCOG01150. (267 aa)    
Predicted Functional Partners:
rps11
30S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
       0.718
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
 
     0.702
rps4
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
       0.652
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
 
     0.639
OLS17413.1
Putative ski2-type helicase; OdinLCB4_06230 NODE_1_length_1181447_cov_4.38286_ID_1_307; IPR014014;IPR014001;IPR027417;IPR013701;IPR001650;IPR01154 5;IPR017170; arCOG00557.
 
    0.607
OLS17893.1
Hypothetical protein; OdinLCB4_11260 NODE_1_length_1181447_cov_4.38286_ID_1_788; IPR003156; arCOG00427.
 
     0.591
smc_8
Chromosome partition protein Smc; OdinLCB4_05670 NODE_1_length_1181447_cov_4.38286_ID_1_254; arCOG01159.
  
     0.583
spt4
Transcription elongation factor Spt4; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.
  
     0.583
cdc6
ORC1-type DNA replication protein; Involved in regulation of DNA replication.
  
     0.554
cysH
Phosphoadenosine phosphosulfate reductase; OdinLCB4_09800 NODE_1_length_1181447_cov_4.38286_ID_1_647; IPR017900;IPR017896;IPR002478;IPR014729;IPR015947;IPR00250 0;IPR004521; arCOG00073;arCOG02449.
  
     0.547
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.