STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrpLeucine-responsive regulatory protein; OdinLCB4_13450 NODE_1_length_1181447_cov_4.38286_ID_1_1001; IPR011008;IPR019887; arCOG01117. (79 aa)    
Predicted Functional Partners:
OLS17155.1
Hypothetical protein; OdinLCB4_03590 NODE_1_length_1181447_cov_4.38286_ID_1_48; IPR016102;IPR013816;IPR003781;IPR016040;IPR011761;IPR01408 9; arCOG01340.
    
  0.710
OLS17409.1
Acetyltransferase Pat; OdinLCB4_06190 NODE_1_length_1181447_cov_4.38286_ID_1_303; IPR016102;IPR011761;IPR016181;IPR003781;IPR016040;IPR00018 2;IPR013815;IPR014089; arCOG00834;arCOG01340.
    
  0.710
tfb_2
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
     
 0.701
OLS18104.1
Hypothetical protein; OdinLCB4_13430 NODE_1_length_1181447_cov_4.38286_ID_1_999; IPR007504;IPR009000;IPR020321; arCOG02466.
       0.695
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.655
hypA
Putative hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.476
truB
Putative tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
    
  0.456
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; OdinLCB4_04180 NODE_1_length_1181447_cov_4.38286_ID_1_107; IPR013749;IPR004399;IPR001303;IPR029056; arCOG00020.
    
 0.422
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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