STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
k-ras_7GTPase KRas precursor; OdinLCB4_13760 NODE_1_length_1181447_cov_4.38286_ID_1_1032; IPR001806;IPR003578;IPR020849;IPR005225;IPR027417;IPR00204 1;IPR003579; arCOG00362. (173 aa)    
Predicted Functional Partners:
OLS18136.1
Hypothetical protein; OdinLCB4_13750 NODE_1_length_1181447_cov_4.38286_ID_1_1031; IPR002831;IPR000835;IPR011991; arCOG02037.
       0.773
dnaJ
Chaperone protein DnaJ; OdinLCB4_05080 NODE_1_length_1181447_cov_4.38286_ID_1_197; IPR001305;IPR008971;IPR012724;IPR001623;IPR002939;IPR01825 3; arCOG06880.
   
 0.557
dpo1
DNA polymerase 1; OdinLCB4_13740 NODE_1_length_1181447_cov_4.38286_ID_1_1030; IPR003587;IPR004042;IPR017964;IPR006172;IPR006141;IPR03093 4;IPR006134;IPR012337;IPR028992;IPR023211;IPR006133;IPR003 586; arCOG15272.
   
   0.555
yfcE
Phosphodiesterase YfcE; OdinLCB4_10250 NODE_1_length_1181447_cov_4.38286_ID_1_688; IPR024654;IPR000979;IPR011152;IPR029052; arCOG01143.
   
 0.549
OLS18510.1
Hypothetical protein; OdinLCB4_02110 NODE_2_length_130697_cov_3.16084_ID_3_46; IPR003595;IPR029021;IPR000340;IPR000387;IPR016130; arCOG03413.
   
 0.517
secY
Protein translocase subunit SecY; OdinLCB4_12880 NODE_1_length_1181447_cov_4.38286_ID_1_945; IPR019561;IPR023201;IPR002208;IPR030659; arCOG04169; Belongs to the SecY/SEC61-alpha family.
  
 
 0.451
OLS17283.1
Hypothetical protein; OdinLCB4_04880 NODE_1_length_1181447_cov_4.38286_ID_1_177; IPR000555.
  
 
 
 0.447
ycf3
Photosystem I assembly protein Ycf3; OdinLCB4_07940 NODE_1_length_1181447_cov_4.38286_ID_1_470; IPR019734;IPR011990;IPR013026; arCOG03042.
   
 0.410
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.