STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carB_3Carbamoyl-phosphate synthase large chain; OdinLCB4_15360 NODE_1_length_1181447_cov_4.38286_ID_1_1192; IPR013816;IPR005479;IPR011761;IPR003806; arCOG01592. (416 aa)    
Predicted Functional Partners:
OLS18298.1
Hypothetical protein; OdinLCB4_15370 NODE_1_length_1181447_cov_4.38286_ID_1_1193; IPR002756;IPR002821; arCOG04369.
 
  
 0.983
OLS18299.1
Hypothetical protein; OdinLCB4_15380 NODE_1_length_1181447_cov_4.38286_ID_1_1194; IPR001048; arCOG00859.
 
   
 0.951
fhcA
Formyltransferase/hydrolase complex Fhc subunit A; OdinLCB4_07090 NODE_1_length_1181447_cov_4.38286_ID_1_391; IPR012027;IPR011059;IPR013108; arCOG04461.
 
   
 0.696
OLS18301.1
Hypothetical protein; OdinLCB4_15400 NODE_1_length_1181447_cov_4.38286_ID_1_1196; IPR007565; arCOG04482.
 
   
 0.663
ftr_2
Formylmethanofuran--tetrahydromethanopterin formyltransferase; OdinLCB4_12280 NODE_1_length_1181447_cov_4.38286_ID_1_887; IPR002770;IPR014053;IPR023447;IPR022667; arCOG02695.
 
     0.655
ftr_1
Formylmethanofuran--tetrahydromethanopterin formyltransferase; OdinLCB4_07490 NODE_1_length_1181447_cov_4.38286_ID_1_427; IPR023447;IPR002770;IPR022667;IPR014053; arCOG02695.
 
     0.643
cd
Deoxycytidylate deaminase; OdinLCB4_15390 NODE_1_length_1181447_cov_4.38286_ID_1_1195; IPR002125;IPR016193;IPR016473;IPR015517;IPR016192; arCOG01487.
       0.642
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT.
 
     0.629
mdcB
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; OdinLCB4_02050 NODE_2_length_130697_cov_3.16084_ID_3_40; IPR002736; arCOG04238.
 
     0.589
fwdC
Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C; OdinLCB4_07100 NODE_1_length_1181447_cov_4.38286_ID_1_392; IPR002489;IPR017550; arCOG00097.
 
     0.588
Your Current Organism:
Odinarchaeota archaeon
NCBI taxonomy Id: 1841599
Other names: C. Odinarchaeota archaeon LCB_4, Candidatus Odinarchaeota archaeon LCB_4, archaeon Odin LCB_4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.