STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOG22817.1[E] COG3232 5-carboxymethyl-2-hydroxymuconate isomerase. (119 aa)    
Predicted Functional Partners:
AOG23375.1
Oxidoreductase, NAD-binding Rossmann fold family protein; [R] COG0673 Predicted dehydrogenases and related proteins.
     
  0.900
AOG24224.1
hpcH/HpaI aldolase/citrate lyase family protein; [G] COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.676
AOG22351.1
[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.581
AOG22964.1
MAPEG family protein; [R] COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily.
       0.581
AOG21836.1
Fumarylacetoacetate (FAA) hydrolase family protein; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
  
 0.510
AOG24023.1
Tn3 transposase DDE domain protein; [L] COG4644 Transposase and inactivated derivatives, TnpA family.
  
     0.456
ligA
DNA ligase, NAD-dependent; Protocatechuate 4,5-dioxygenase, alpha subunit; PCA_ligA: protocatechuate 4,5-dioxygenase, alpha subunit.
  
  
 0.415
AOG22787.1
Aromatic-ring-opening dioxygenase LigAB, LigA subunit.
  
  
 0.415
AOG21376.1
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein.
  
  
 0.415
BSY15_184
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein; [S] COG3384 Uncharacterized conserved protein.
  
  
 0.415
Your Current Organism:
Acidovorax sp. RAC01
NCBI taxonomy Id: 1842533
Other names: A. sp. RAC01
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