STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOG02524.1ostA-like family protein; [S] COG1934 Uncharacterized protein conserved in bacteria. (181 aa)    
Predicted Functional Partners:
lptB
LPS_export_lptB: LPS export ABC transporter ATP-binding protein; [R] COG1137 ABC-type (unclassified) transport system, ATPase component.
  
 
 0.979
AOF99837.1
Lipopolysaccharide-assembly, LptC-related family protein; [S] COG5375 Uncharacterized protein conserved in bacteria.
 
  
 0.959
lptD
Organic solvent tolerance family protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 0.931
lptF
lptF_YjgP: LPS export ABC transporter permease LptF; [R] COG0795 Predicted permeases.
 
  
 0.744
lptG
lptG_lptG: LPS export ABC transporter permease LptG; [R] COG0795 Predicted permeases.
 
  
 0.733
AOG02367.1
3'-5' exonuclease family protein; [J] COG0349 Ribonuclease D.
 
     0.706
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.679
AOG01345.1
Putative nifU-like protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
  
     0.659
flgC
flgC: flagellar basal-body rod protein FlgC; [N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.615
BSY18_704
Hypothetical protein.
  
     0.611
Your Current Organism:
Blastomonas sp. RAC04
NCBI taxonomy Id: 1842535
Other names: B. sp. RAC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.