STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimORibosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (460 aa)    
Predicted Functional Partners:
BSY18_726
Major intrinsic family protein; [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.556
BSY18_729
Hypothetical protein.
  
    0.556
rlmN
23S rRNA (adenine(2503)-C(2))-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.546
BSY18_728
Hypothetical protein.
       0.533
lepB
sigpep_I_bact: signal peptidase I; [U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.463
lepB-2
sigpep_I_bact: signal peptidase I; [U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.463
AOG00334.1
RNA methyltransferase, RsmE family protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
  
 0.451
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
  
 0.448
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.437
AOG01324.1
Cytosol aminopeptidase family, catalytic domain protein; [E] COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.422
Your Current Organism:
Blastomonas sp. RAC04
NCBI taxonomy Id: 1842535
Other names: B. sp. RAC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.